What type of hardware are you using: Old laptop or computer What YunoHost version are you running: 11.3.0.2 (stable). How are you able to access your server: SSH Are you in a special context or did you perform specific tweaking on your YunoHost instance ?: no
Describe your issue
What order do I try to fix things in? I will recreate this support request when I know that.
When trying to upgrade to bookworm I got - System update There are some pending migrations waiting to be run. Please go to Tools > Migrations to run them.
Failed to read info for audiobookshelf : Invalid version: ‘2.17.5~ynh1’
Failed to read info for netdata : Invalid version: ‘1.47.5~ynh1’
Failed to read info for nextcloud : Invalid version: ‘29.0.7~ynh2’
Failed to read info for photoprism : Invalid version: ‘2022.09.01~ynh4’
Failed to read info for syncthing : Invalid version: ‘1.28.1~ynh1’
Running migration 0027_migrate_to_bookworm…
Starting migration to Bookworm…
Patching the sources.lists file…
Applying patch to workaround conflict issue…
Starting main upgrade…
Hi and thanks for the reply. Yes, I tried to upgrade in december and posted here but without success.
I’ve only just got back to it as I need to allocate a day at least to working through issues and trying fixes
Latest Logs
Migration to bookworm
Diagnosis log
ended_at: 2025-01-18 11:49:03.012559
error: 'Migration 0027_migrate_to_bookworm did not complete, aborting. Error: Failed
to run command ''aptitude full-upgrade cron rspamd- luajit- libluajit-5.1-2- --show-why
-o APT::Force-LoopBreak=1 -o Dpkg::Options::=''--force-confold'''''
interface: api
operation: tools_migrations_migrate_forward
parent: null
started_at: 2025-01-18 11:48:37.752941
success: false
yunohost_version: 11.3.0.2
============
2025-01-18 22:48:37,758: INFO - Running migration 0027_migrate_to_bookworm…
2025-01-18 22:48:37,764: INFO - Starting migration to Bookworm…
2025-01-18 22:48:40,384: INFO - Patching the sources.lists file…
2025-01-18 22:48:40,995: DEBUG - Running: LC_ALL=C DEBIAN_FRONTEND=noninteractive APT_LISTCHANGES_FRONTEND=none aptitude update --quiet=2 -o=Dpkg::Use-Pty=0 -o "APT::Status-Fd=$YNH_STDINFO"
2025-01-18 22:48:45,535: INFO - Applying patch to workaround conflict issue…
2025-01-18 22:48:45,554: DEBUG - Running: sed -i /var/lib/dpkg/status -e 's@Conflicts: apache2, bind9@Conflicts: apache2, bind9@g'
2025-01-18 22:48:45,573: INFO - Starting main upgrade…
2025-01-18 22:48:45,593: DEBUG - Running: LC_ALL=C DEBIAN_FRONTEND=noninteractive APT_LISTCHANGES_FRONTEND=none aptitude markauto mariadb-server metronome rspamd php-common php-mbstring php-pear php-php-gettext php-xml php7.4-cli php7.4-common php7.4-curl php7.4-fpm php7.4-gd php7.4-intl php7.4-json php7.4-ldap php7.4-mbstring php7.4-mysql php7.4-opcache php7.4-readline php7.4-xml php8.2-cli php8.2-common php8.2-gd php8.2-mbstring php8.2-opcache php8.2-readline php8.2-xml php8.3 php8.3-apcu php8.3-bcmath php8.3-bz2 php8.3-cli php8.3-common php8.3-curl php8.3-fpm php8.3-gd php8.3-gmp php8.3-igbinary php8.3-imagick php8.3-imap php8.3-intl php8.3-ldap php8.3-mbstring php8.3-mysql php8.3-opcache php8.3-readline php8.3-redis php8.3-xml php8.3-zip --quiet=2 -o=Dpkg::Use-Pty=0 -o "APT::Status-Fd=$YNH_STDINFO"
2025-01-18 22:48:47,057: DEBUG - Package rspamd is not installed, cannot be marked/unmarked as automatically installed
2025-01-18 22:48:48,085: DEBUG - Running: YUNOHOST_API_RESTART_WILL_BE_HANDLED_BY_YUNOHOST=yes LC_ALL=C DEBIAN_FRONTEND=noninteractive APT_LISTCHANGES_FRONTEND=none aptitude hold yunohost moulinette ssowat yunohost-admin audiobookshelf-ynh-deps netdata-ynh-deps nextcloud-ynh-deps photoprism-ynh-deps --quiet=2 -o=Dpkg::Use-Pty=0 -o "APT::Status-Fd=$YNH_STDINFO"
2025-01-18 22:48:50,088: DEBUG - Running: sed -i /var/lib/dpkg/status -e 's@rspamd, @@g'
2025-01-18 22:48:50,108: DEBUG - Running: LC_ALL=C DEBIAN_FRONTEND=noninteractive APT_LISTCHANGES_FRONTEND=none aptitude full-upgrade cron rspamd- luajit- libluajit-5.1-2- --show-why -o APT::Force-LoopBreak=1 -o Dpkg::Options::='--force-confold' --quiet=2 -o=Dpkg::Use-Pty=0 -o "APT::Status-Fd=$YNH_STDINFO"
2025-01-18 22:48:52,136: DEBUG - cron is already installed at the latest version (3.0pl1-162), so it will not be upgraded
2025-01-18 22:48:52,136: DEBUG - Package rspamd is not installed, so it will not be removed
2025-01-18 22:48:52,137: DEBUG - Package luajit is not installed, so it will not be removed
2025-01-18 22:48:52,137: DEBUG - Package libluajit-5.1-2 is not installed, so it will not be removed
2025-01-18 22:48:52,137: DEBUG - cron is already installed at the latest version (3.0pl1-162), so it will not be upgraded
2025-01-18 22:48:52,137: DEBUG - Package rspamd is not installed, so it will not be removed
2025-01-18 22:48:52,137: DEBUG - Package luajit is not installed, so it will not be removed
2025-01-18 22:48:52,137: DEBUG - Package libluajit-5.1-2 is not installed, so it will not be removed
2025-01-18 22:48:52,137: DEBUG - The following partially installed packages will be configured:
2025-01-18 22:48:52,138: DEBUG - grub-pc
2025-01-18 22:48:52,138: DEBUG - No packages will be installed, upgraded, or removed.
2025-01-18 22:48:52,138: DEBUG - 0 packages upgraded, 0 newly installed, 0 to remove and 95 not upgraded.
2025-01-18 22:48:52,138: DEBUG - Need to get 0 B of archives. After unpacking 0 B will be used.
2025-01-18 22:48:52,161: DEBUG - Setting up grub-pc (2.06-13+deb12u1) ...
2025-01-18 22:48:52,161: INFO - [....................] > 0.0% Installing grub-pc
2025-01-18 22:48:52,963: DEBUG - grub-pc: Running grub-install ...
2025-01-18 22:48:52,984: DEBUG - Installing for i386-pc platform.
2025-01-18 22:48:56,440: DEBUG - grub-install: error: unable to identify a filesystem in hostdisk//dev/sda; safety check can't be performed.
2025-01-18 22:48:56,470: DEBUG - grub-install failure for /dev/sda
2025-01-18 22:48:56,473: DEBUG - You must correct your GRUB install devices before proceeding:
2025-01-18 22:48:56,473: DEBUG -
2025-01-18 22:48:56,474: DEBUG - DEBIAN_FRONTEND=dialog dpkg --configure grub-pc
2025-01-18 22:48:56,474: DEBUG - dpkg --configure -a
2025-01-18 22:48:56,575: DEBUG - dpkg: error processing package grub-pc (--configure):
2025-01-18 22:48:56,576: DEBUG - installed grub-pc package post-installation script subprocess returned error exit status 1
2025-01-18 22:48:56,626: DEBUG - Errors were encountered while processing:
2025-01-18 22:48:56,627: DEBUG - grub-pc
2025-01-18 22:48:56,816: WARNING - E: Sub-process /usr/bin/dpkg returned an error code (1)
2025-01-18 22:48:56,835: DEBUG - Setting up grub-pc (2.06-13+deb12u1) ...
2025-01-18 22:48:57,579: WARNING - grub-pc: Running grub-install ...
2025-01-18 22:48:57,592: WARNING - Installing for i386-pc platform.
2025-01-18 22:49:00,832: WARNING - grub-install: error: unable to identify a filesystem in hostdisk//dev/sda; safety check can't be performed.
2025-01-18 22:49:00,856: WARNING - grub-install failure for /dev/sda
2025-01-18 22:49:00,859: WARNING - You must correct your GRUB install devices before proceeding:
2025-01-18 22:49:00,860: WARNING -
2025-01-18 22:49:00,860: WARNING - DEBIAN_FRONTEND=dialog dpkg --configure grub-pc
2025-01-18 22:49:00,860: WARNING - dpkg --configure -a
2025-01-18 22:49:00,958: WARNING - dpkg: error processing package grub-pc (--configure):
2025-01-18 22:49:00,959: WARNING - installed grub-pc package post-installation script subprocess returned error exit status 1
2025-01-18 22:49:01,006: WARNING - Errors were encountered while processing:
2025-01-18 22:49:01,007: WARNING - grub-pc
2025-01-18 22:49:03,008: ERROR - Migration 0027_migrate_to_bookworm did not complete, aborting. Error: Failed to run command 'aptitude full-upgrade cron rspamd- luajit- libluajit-5.1-2- --show-why -o APT::Force-LoopBreak=1 -o Dpkg::Options::='--force-confold''
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/yunohost/tools.py", line 786, in tools_migrations_run
migration.run()
File "/usr/lib/python3/dist-packages/yunohost/migrations/0027_migrate_to_bookworm.py", line 204, in run
aptitude_with_progress_bar(
File "/usr/lib/python3/dist-packages/yunohost/utils/system.py", line 315, in aptitude_with_progress_bar
raise YunohostError(
yunohost.utils.error.YunohostError: Failed to run command 'aptitude full-upgrade cron rspamd- luajit- libluajit-5.1-2- --show-why -o APT::Force-LoopBreak=1 -o Dpkg::Options::='--force-confold''
2. Diagnosis
=================================
Base system (basesystem)
=================================
[INFO] Server hardware architecture is bare-metal amd64
- Server model is Gigabyte Technology Co., Ltd. X58A-UD3R
[INFO] Server is running Linux kernel 6.1.0-28-amd64
[INFO] Server is running Debian 12.8
[INFO] Server is running YunoHost 11.3.0.2 (stable)
- yunohost version: 11.3.0.2 (stable)
- yunohost-admin version: 11.3.0 (stable)
- moulinette version: 11.3.0 (stable)
- ssowat version: 11.3.0 (stable)
=================================
Internet connectivity (ip)
=================================
[SUCCESS] Domain name resolution is working!
[SUCCESS] The server is connected to the Internet through IPv4!
- Global IP: xx.xx.xx.xx
- Local IP: 192.168.50.5
[WARNING] The server does not have working IPv6.
- IPv6 should usually be automatically configured by the system or your provider if it's available. Otherwise, you might need to configure a few things manually as explained in the documentation here: https://yunohost.org/ipv6.
=================================
DNS records (dnsrecords)
=================================
[SUCCESS] DNS records are correctly configured for domain maindomain.tld (category basic)
[SUCCESS] DNS records are correctly configured for domain maindomain.tld (category mail)
[SUCCESS] DNS records are correctly configured for domain maindomain.tld (category xmpp)
[SUCCESS] DNS records are correctly configured for domain maindomain.tld (category extra)
[INFO] Domain domain2.tld is based on a special-use top-level domain (TLD) such as .local or .test and is therefore not expected to have actual DNS records.
=================================
Ports exposure (ports)
=================================
[SUCCESS] Port 22 is reachable from the outside.
- Exposing this port is needed for admin features (service ssh)
[SUCCESS] Port 25 is reachable from the outside.
- Exposing this port is needed for email features (service postfix)
[SUCCESS] Port 80 is reachable from the outside.
- Exposing this port is needed for web features (service nginx)
[SUCCESS] Port 443 is reachable from the outside.
- Exposing this port is needed for web features (service nginx)
[SUCCESS] Port 587 is reachable from the outside.
- Exposing this port is needed for email features (service postfix)
[SUCCESS] Port 993 is reachable from the outside.
- Exposing this port is needed for email features (service dovecot)
[SUCCESS] Port 5222 is reachable from the outside.
- Exposing this port is needed for xmpp features (service metronome)
[SUCCESS] Port 5269 is reachable from the outside.
- Exposing this port is needed for xmpp features (service metronome)
[SUCCESS] Port 22000 is reachable from the outside.
- Exposing this port is needed for [?] features (service syncthing)
=================================
Web (web)
=================================
[INFO] Domain domain2.tld is based on a special-use top-level domain (TLD) such as .local or .test and is therefore not expected to be exposed outside the local network.
[SUCCESS] Domain maindomain.tld is reachable through HTTP from outside the local network.
[SUCCESS] Domain audiobookshelf.maindomain.tld is reachable through HTTP from outside the local network.
=================================
Email (mail)
=================================
[SUCCESS] The SMTP mail server is able to send emails (outgoing port 25 is not blocked).
[SUCCESS] The SMTP mail server is reachable from the outside and therefore is able to receive emails!
[SUCCESS] Your reverse DNS is correctly configured!
[SUCCESS] The IPs and domains used by this server do not appear to be blacklisted
[SUCCESS] 0 pending emails in the mail queues
=================================
Services status check (services)
=================================
[SUCCESS] Service audiobookshelf is running!
[SUCCESS] Service dnsmasq is running!
[SUCCESS] Service dovecot is running!
[SUCCESS] Service fail2ban is running!
[SUCCESS] Service metronome is running!
[SUCCESS] Service mysql is running!
[SUCCESS] Service netdata is running!
[SUCCESS] Service nginx is running!
[SUCCESS] Service photoprism is running!
[SUCCESS] Service php7.4-fpm is running!
[SUCCESS] Service php8.3-fpm is running!
[SUCCESS] Service postfix is running!
[SUCCESS] Service postgresql is running!
[SUCCESS] Service redis-server is running!
[ERROR] Service rspamd is dead :(
- You can try to restart the service, and if it doesn't work, have a look at the service logs in the webadmin (from the command line, you can do this with 'yunohost service restart rspamd' and 'yunohost service log rspamd').
[SUCCESS] Service slapd is running!
[SUCCESS] Service ssh is running!
[SUCCESS] Service syncthing is running!
[SUCCESS] Service yunohost-api is running!
[SUCCESS] Service yunohost-firewall is running!
[SUCCESS] Service yunomdns is running!
=================================
System resources (systemresources)
=================================
[SUCCESS] The system still has 6.0 GiB (77%) RAM available out of 7.8 GiB.
[SUCCESS] The system has 976 MiB of swap!
- Please be careful and aware that if the server is hosting swap on an SD card or SSD storage, it may drastically reduce the life expectancy of the device.
[SUCCESS] Storage / (on device /dev/mapper/system-root) still has 405 GiB (91.4%) space left (out of 443 GiB)!
[SUCCESS] Storage /boot (on device /dev/sdb1) still has 109 MiB (51%) space left (out of 213 MiB)!
[SUCCESS] Storage /home/accessy/apps/audiobookshelf (on device /dev/mapper/system-root) still has 405 GiB (91.4%) space left (out of 443 GiB)!
[SUCCESS] Storage /home/yunohost.app/audiobookshelf/data (on device /dev/mapper/system-audiobookshelf) still has 124 GiB (44%) space left (out of 279 GiB)!
[SUCCESS] Storage /home/yunohost.app/nextcloud/data (on device /dev/mapper/system-nextcloud) still has 331 GiB (35%) space left (out of 933 GiB)!
[SUCCESS] Storage /home/yunohost.multimedia/accessy/audiobookshelf (on device /dev/mapper/system-audiobookshelf) still has 124 GiB (44%) space left (out of 279 GiB)!
=================================
System configurations (regenconf)
=================================
=================================
Applications (apps)
=================================
[SUCCESS] All installed apps respect basic packaging practices
Type dpkg --help for help about installing and deinstalling packages [*];
Use ‘apt’ or ‘aptitude’ for user-friendly package management;
Type dpkg -Dhelp for a list of dpkg debug flag values;
Type dpkg --force-help for a list of forcing options;
Type dpkg-deb --help for help about manipulating *.deb files;
Options marked [*] produce a lot of output - pipe it through ‘less’ or ‘more’ !
ok. I think I worked that out. I ran pkg --configure -a
root@@@@@:~# root@@@@@:~# dpkg --configure -a
Setting up grub-pc (2.06-13+deb12u1) …
grub-pc: Running grub-install …
Installing for i386-pc platform.
grub-install: error: unable to identify a filesystem in hostdisk//dev/sda; safet y check can’t be performed.
grub-install failure for /dev/sda
You must correct your GRUB install devices before proceeding:
DEBIAN_FRONTEND=dialog dpkg --configure grub-pc
dpkg --configure -a
dpkg: error processing package grub-pc (–configure):
installed grub-pc package post-installation script subprocess returned error ex it status 1
Errors were encountered while processing:
grub-pc
If that does not solve the problem, please post the results of
$ sudo lsblk
and of
$ sudo fdisk -l
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