Jappix not working after update to YunoHost 2.4

Support
1

I have upgraded the Yunohost version to 2.4.
After upgrade Jappix is giving Error:Service unavailable

The jappix after updating gives error in mysql.

Warning: W: Failed to fetch http://repo.yunohost.org/debian/dists/jessie/InRelease
Warning: 
Warning: W: Failed to fetch http://repo.yunohost.org/debian/dists/jessie/Release.gpg  Cannot initiate the connection to repo.yunohost.org:80 (2001:bc8:368c:400::10). - connect (101: Network is unreachable) [IP: 2001:bc8:368c:400::10 80]
Warning: 
Warning: W: Some index files failed to download. They have been ignored, or old ones used instead.
Warning: warning: etckeeper failed to commit changes in /etc using git
Warning: ERROR: [1050] Table 'collected_contacts' already exists (SQL Query: CREATE TABLE `collected_contacts` (
Warning: 
Warning:  `contact_id` int(10) UNSIGNED NOT NULL AUTO_INCREMENT,
Warning: 
Warning:  `changed` datetime NOT NULL DEFAULT '1000-01-01 00:00:00',
Warning: 
Warning:  `del` tinyint(1) NOT NULL DEFAULT '0',
Warning: 
Warning:  `name` varchar(128) NOT NULL DEFAULT '',
Warning: 
Warning:  `email` text NOT NULL,
Warning: 
Warning:  `firstname` varchar(128) NOT NULL DEFAULT '',
Warning: 
Warning:  `surname` varchar(128) NOT NULL DEFAULT '',
Warning: 
Warning:  `vcard` longtext NULL,
Warning: 
Warning:  `words` text NULL,
Warning: 
Warning:  `user_id` int(10) UNSIGNED NOT NULL,
Warning: 
Warning:  PRIMARY KEY(`contact_id`),
Warning: 
Warning:  CONSTRAINT `user_id_fk_collected_contacts` FOREIGN KEY (`user_id`)
Warning: 
Warning:    REFERENCES `users`(`user_id`) ON DELETE CASCADE ON UPDATE CASCADE,
Warning: 
Warning:  INDEX `user_collected_contacts_index` (`user_id`,`del`)
Warning: 
Warning: ) /*!40000 ENGINE=INNODB */ /*!40101 CHARACTER SET utf8 COLLATE utf8_general_ci */)Error 500: Error in DDL schema /var/www/roundcube/plugins/automatic_addressbook/SQL/mysql.initial.sql: [1050] Table 'collected_contacts' already exists
2

Even noticed that Agendav is not showing any calendar activity or event.

3

After upgrade to 2.4, my jappix is working fine but I never used it before…
I got the same warning about the Table collected_contacts but I “guess” that it is used by roundcube and not jappix.

About Agendav, I have the same issue. Maybe, it is better to create a dedicated post about it ?
I checked the logs about agendav but didn’t find anything interesting :

root@yunohost:~# tail /var/log/agendav/log-2016-05-24.php 
ERROR - 2016-05-24 17:31:13 --> Severity: Notice  --> Only variable references should be returned by reference /var/www/agendav/web/system/core/Common.php 257
ERROR - 2016-05-24 17:31:13 --> Severity: 8192  --> mysql_pconnect(): The mysql extension is deprecated and will be removed in the future: use mysqli or PDO instead /var/www/agendav/web/system/database/drivers/mysql/mysql_driver.php 91
ERROR - 2016-05-24 17:31:13 --> Severity: Notice  --> Only variable references should be returned by reference /var/www/agendav/web/system/core/Common.php 257
ERROR - 2016-05-24 17:31:13 --> Severity: 8192  --> mysql_pconnect(): The mysql extension is deprecated and will be removed in the future: use mysqli or PDO instead /var/www/agendav/web/system/database/drivers/mysql/mysql_driver.php 91
ERROR - 2016-05-24 17:31:15 --> Severity: Notice  --> Only variable references should be returned by reference /var/www/agendav/web/system/core/Common.php 257
ERROR - 2016-05-24 17:31:15 --> Severity: 8192  --> mysql_pconnect(): The mysql extension is deprecated and will be removed in the future: use mysqli or PDO instead /var/www/agendav/web/system/database/drivers/mysql/mysql_driver.php 91
ERROR - 2016-05-24 17:31:16 --> Severity: Notice  --> Only variable references should be returned by reference /var/www/agendav/web/system/core/Common.php 257
ERROR - 2016-05-24 17:31:16 --> Severity: 8192  --> mysql_pconnect(): The mysql extension is deprecated and will be removed in the future: use mysqli or PDO instead /var/www/agendav/web/system/database/drivers/mysql/mysql_driver.php 91
ERROR - 2016-05-24 17:35:48 --> Severity: Notice  --> Only variable references should be returned by reference /var/www/agendav/web/system/core/Common.php 257
ERROR - 2016-05-24 17:35:48 --> Severity: 8192  --> mysql_pconnect(): The mysql extension is deprecated and will be removed in the future: use mysqli or PDO instead /var/www/agendav/web/system/database/drivers/mysql/mysql_driver.php 91
root@yunohost:~#
4

Agendav is not showing events but I can see them on my phone. i misunderstood kanku post
I can create new events in Agendav and they will appear later on my phone.

I followed the Agendav documentation for troubleshooting but there was no more interesting logs than posted previously
http://docs.agendav.org/en/1.2.6.2/admin/troubleshooting/