How to upgrade to Yunohost 12.1.40

What type of hardware are you using: VPS bought online
What YunoHost version are you running: 12.1.39
How are you able to access your server: The webadmin
SSH
Other(?)
Are you in a special context or did you perform specific tweaking on your YunoHost instance ?: No

Describe your issue

I do not see the upgrade for Yunohost 12.1.40/12.1.40.1 in the webadmin or in the command line (yunohost tools update / yunohost tools upgade system even apt-get update / apt-get upgrade)

Some apps claim Yunohost 12.1.40 at least to upgrade

My server has been restarted 20 days ago

Share relevant logs or error messages

yunohost tools upgrade system
Info: Nothing to do. Everything is already up-to-date.
Info: Upgrading packages…
Info: Upgrading system packages
Info: + Reading package lists…
Info: + Building dependency tree…
Info: + Reading state information…
Info: + Calculating upgrade…
Info: + 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Success! System upgraded

apt-get update
Hit:1 Index of /debian bookworm InRelease
Hit:2 Index of /php/ bookworm InRelease
Hit:3 https://dl.yarnpkg.com/debian stable InRelease
Reading package lists… Done
root@julien:~# apt-get upgrade
Reading package lists… Done
Building dependency tree… Done
Reading state information… Done
Calculating upgrade… Done
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

What is the output of yunohost tools regen-conf --dry-run --with-diff

Hi jarod5001,

Thank you for your answer, when I run the command yunohost tools regen-conf --dry-run --with-diffit complain about the fact that the ssh file has been manually modified, it’s true, I did add a /etc/ssh/sshd_config.d/My.conf and I should not have done it the right way but I will fix this another day

Just after I posted my message, I remember I had a virtual machine I used for test with Yunohost installed on it, I had a look at the source lists and found out /etc/apt/sources.list.d/yunohost.list` containing

deb [signed-by=/usr/share/keyrings/yunohost-bookworm.gpg] Index of /debian/ bookworm stable

was missing from my vps config, I add it and run yunohost tools upgrade system and finally get the Yunohost 12.1.40.1 in a minute

Now I can upgrade the apps

Sorry for the noise and thank you for the quick answer