HedgeDoc upgrade failed

snm · June 8, 2023, 11:18am

My YunoHost server

Hardware: Old computer at home
YunoHost version: 11.1.20
I have access to my server : Through SSH | through the webadmin
Are you in a special context or did you perform some particular tweaking on your YunoHost instance ? : no
If your request is related to an app, specify its name and version: HedgeDoc 1.9.7~ynh3

Description of my issue

Hi,

I’m trying to upgrade HedgeDoc from Version 1.9.7~ynh3 to Version 1.9.8~ynh1. It fails with
FATAL ERROR: Reached heap limit Allocation failed - JavaScript heap out of memory.

This is the log: https://paste.yunohost.org/raw/uqasulebak

Here is a problem with the same error message where it was assumed that there was not enough memory:

But my server already uses an 8G swap file:

sudo swapon -s && echo && free
Filename            Type            Size    Used    Priority
/swapfile           file            8388604 803384  -2
/dev/dm-1           partition       999420  0       -3
/dev/zram0          partition       262140  262132  100

               total        used        free      shared  buff/cache   available
Mem:         1938512     1486816       70588       21796      381108      279012
Swap:        9650164     1067828     8582336

Shouldn’t that be sufficient? Any ideas what I could try?

pqc · June 18, 2023, 5:02pm

I am having the same issue.

YunoHost version: 11.1.21.4

I just tried increasing my swap from 2GB to 4GB and it still failed, but it sounds like 8GB isn’t even enough!

Also wondering if anyone has any idea on how to fix this!

pqc · June 19, 2023, 4:49pm

I did a little digging into this, and it seems there have been issues in the past trying to run or install HedgeDoc with 2GB (or less) of memory. (I only have 2GB of physical memory.)

github.com/YunoHost-Apps/hedgedoc_ynh

Failed when trying to install Hedgedoc.

opened 06:06PM - 29 Jan 21 UTC

closed 08:34AM - 21 Mar 21 UTC

SimonLefort

Hello, **Describe the bug** I was trying to install Hedgedoc on a sub-domain…. It didn't work and the application wasn't installed. **Versions** - Hardware: Kimsufi KS-3 Server - YunoHost version: 4.1.6 (everything up-to-date) - I have access to my server: *Through SSH | through the webadmin* - Are you in a special context or did you perform some particular tweaking on your YunoHost instance?: *no* - Using, or trying to install package version/branch: 1.7.2 **To Reproduce** I tried from the webadmin but it's the same from the CLI : ```sh $ sudo yunohost app install hedgedoc Choose the domain where this app should be installed [mydomain.be | cloud.mydomain.be | pad.mydomain.be] (default: mydomain.be): pad.mydomain.be Choose the path where this app should be installed (default: /hedgedoc): / Should this app be exposed to anonymous visitors? [yes | no] (default: yes): yes Info: Installing hedgedoc... Info: [....................] > Validating installation parameters... Info: [....................] > Storing installation settings... Info: [+...................] > Finding an available port... Info: [#++++++.............] > Installing dependencies... Info: Installation of N - Node.js version management Info: '/etc/apt/trusted.gpg.d/hedgedoc.asc' wasn't deleted because it doesn't exist. Info: [#######+............] > Creating a PostgreSQL database... Info: [########+...........] > Setting up source files... Info: [#########...........] > Configuring NGINX web server... Info: [#########+..........] > Configuring system user... Info: [##########++++++....] > Building HedgeDoc... (this will take some time and resources!) Warning: error /var/www/hedgedoc/node_modules/sqlite3: Command failed. Warning: Exit code: 1 (...) ``` **Expected behavior** I expected Hedgedoc installation. **Logs** The logs are there : https://paste.yunohost.org/raw/egofapesoy

github.com/YunoHost-Apps/hedgedoc_ynh

Error during installation

opened 02:52AM - 28 Dec 20 UTC

closed 07:08AM - 04 Jan 21 UTC

shaun-floss

I tried installing HedgeDoc, but ran into an error. It looks like it's an out… of memory error, here's a piece of the stacktrace: > 2020-12-27 20:34:07,830: DEBUG - <--- JS stacktrace ---> > 2020-12-27 20:34:07,830: DEBUG - > 2020-12-27 20:34:07,830: DEBUG - FATAL ERROR: Ineffective mark-compacts near heap limit Allocation failed - JavaScript heap out of memory > 2020-12-27 20:34:07,830: DEBUG - 1: 0xa04200 node::Abort() [/opt/node_n/n/versions/node/14.15.3/bin/node] > 2020-12-27 20:34:07,830: DEBUG - 2: 0x94e4e9 node::FatalError(char const*, char const*) [/opt/node_n/n/versions/node/14.15.3/bin/node] > 2020-12-27 20:34:07,830: DEBUG - 3: 0xb7860e v8::Utils::ReportOOMFailure(v8::internal::Isolate*, char const*, bool) [/opt/node_n/n/versions/node/14.15.3/bin/node] > 2020-12-27 20:34:07,831: DEBUG - 4: 0xb78987 v8::internal::V8::FatalProcessOutOfMemory(v8::internal::Isolate*, char const*, bool) [/opt/node_n/n/versions/node/14.15.3/bin/node] > 2020-12-27 20:34:07,831: DEBUG - 5: 0xd33215 [/opt/node_n/n/versions/node/14.15.3/bin/node] > 2020-12-27 20:34:07,831: DEBUG - 6: 0xd33d9f [/opt/node_n/n/versions/node/14.15.3/bin/node] > 2020-12-27 20:34:07,831: DEBUG - 7: 0xd41e2b v8::internal::Heap::CollectGarbage(v8::internal::AllocationSpace, v8::internal::GarbageCollectionReason, v8::GCCallbackFlags) [/opt/node_n/n/versions/node/14.15.3/bin/node] > 2020-12-27 20:34:07,831: DEBUG - 8: 0xd459ec v8::internal::Heap::AllocateRawWithRetryOrFailSlowPath(int, v8::internal::AllocationType, v8::internal::AllocationOrigin, v8::internal::AllocationAlignment) [/opt/node_n/n/versions/node/14.15.3/bin/node] > 2020-12-27 20:34:07,831: DEBUG - 9: 0xd140cb v8::internal::Factory::NewFillerObject(int, bool, v8::internal::AllocationType, v8::internal::AllocationOrigin) [/opt/node_n/n/versions/node/14.15.3/bin/node] > 2020-12-27 20:34:07,831: DEBUG - 10: 0x105a06f v8::internal::Runtime_AllocateInYoungGeneration(int, unsigned long*, v8::internal::Isolate*) [/opt/node_n/n/versions/node/14.15.3/bin/node] > 2020-12-27 20:34:07,832: DEBUG - 11: 0x1400039 [/opt/node_n/n/versions/node/14.15.3/bin/node] > 2020-12-27 20:34:07,832: DEBUG - Aborted > 2020-12-27 20:34:07,932: DEBUG - error Command failed with exit code 134. > 2020-12-27 20:34:07,933: DEBUG - info Visit https://yarnpkg.com/en/docs/cli/run for documentation about this command. > 2020-12-27 20:34:07,933: DEBUG - + ynh_exit_properly > 2020-12-27 20:34:07,933: DEBUG - + local exit_code=134 > 2020-12-27 20:34:07,934: DEBUG - + '[' 134 -eq 0 ']' > 2020-12-27 20:34:07,934: DEBUG - + trap '' EXIT > 2020-12-27 20:34:07,934: DEBUG - + set +o errexit > 2020-12-27 20:34:07,934: DEBUG - + set +o nounset > 2020-12-27 20:34:07,935: DEBUG - + sleep 0.5 > 2020-12-27 20:34:08,436: DEBUG - + type -t ynh_clean_setup > 2020-12-27 20:34:08,437: DEBUG - + ynh_clean_setup > 2020-12-27 20:34:08,437: DEBUG - + ynh_clean_check_starting > 2020-12-27 20:34:08,437: DEBUG - + '[' -n '' ']' > 2020-12-27 20:34:08,437: DEBUG - + '[' -n '' ']' > 2020-12-27 20:34:08,438: DEBUG - + exit 1 > 2020-12-27 20:34:08,627: ERROR - Could not install hedgedoc: An error occurred inside the app installation script > I'm on a VPS with 1 GB of RAM. According to the YunoHost documentation, 1 GB of RAM should be enough: > 512 MB RAM (recommended : 1 GB in order to run all the services and apps properly) [https://yunohost.org/#/hardware](https://yunohost.org/#/hardware) But it looks like it's possible that HedgeDoc could use 2 GB of RAM (not sure if the YunoHost version does this)?: > For building the HedgeDoc frontend you need a machine with at least 2 GB RAM. [https://github.com/hedgedoc/hedgedoc/blob/master/docs/setup/manual-setup.md](https://github.com/hedgedoc/hedgedoc/blob/master/docs/setup/manual-setup.md) I can try upgrading the RAM, but before I do is there anything I can try to get it to install with 1 GB of RAM? YunoHost 4.0.8.3 running on a VPS Full logs: https://paste.yunohost.org/raw/urayaqoqun

snm · June 30, 2023, 12:47pm

@pqc Thanks for your investigation!

There is also this:

github.com/YunoHost-Apps/hedgedoc_ynh

upgrade 1.9.6~ynh2 to 1.9.7~ynh2 is failing

opened 05:41PM - 13 Mar 23 UTC

closed 09:06PM - 17 Apr 23 UTC

isAAAc

### Describe the bug upgrade to 1.9.7~ynh2 is failing ### Context - Har…dware: *VPS bought online / Old laptop or computer / Raspberry Pi at home / Internet Cube with VPN / Other ARM board / ...* - YunoHost version: ``` root@gourzoot:~# yunohost --version yunohost: repo: stable version: 11.1.15 yunohost-admin: repo: stable version: 11.1.7 moulinette: repo: stable version: 11.1.4 ssowat: repo: stable version: 11.1.4 ``` - I have access to my server: *Through SSH | through the webadmin * - Are you in a special context or did you perform some particular tweaking on your YunoHost instance?: *no * - Using, or trying to install package version/branch: `1.9.7~ynh2` - If upgrading, current package version: `1.9.6~ynh2` ### Steps to reproduce - *If you performed a command from the CLI, the command itself is enough. For example:* ```sh # yunohost app upgrade hedgedoc ``` ### Expected behavior i expect an upgrade to `1.9.7~ynh2` ### Logs * first try: https://paste.yunohost.org/raw/xoruxuzeha i clean yarn cache and retry: ``` root@gourzoot:~# sudo yarn cache clean yarn cache v1.22.19 success Cleared cache. Done in 0.07s. ``` * second try is running

It seems adding more Swap doesn’t solve the problem while adding more RAM helps.

I don’t think, though, that adding more RAM is a good solution as long as this is only needed for upgrading an app. Everything is working well on my YunoHost except upgrading HedgeDoc. Using HedgeDoc works without any problems and I’m using it a lot.

Why isn’t it sufficient to add more Swap instead of RAM?
And why is HedgeDoc built on YunoHost instead of providing a prebuilt version?

Thanks in advance for any info / ideas / thoughts / workarounds …

ericg · July 1, 2023, 12:24pm

Should be fixed in the next update

pqc · July 1, 2023, 10:06pm

Good find @snm! Thanks for the update @ericg!

system · July 16, 2023, 10:06pm

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