Nextcloud skeleton folder

My YunoHost server

Hardware: Some server, not virtualization, bare metal.
YunoHost version: (stable)
I have access to my server : Through SSH | through the webadmin
Are you in a special context or did you perform some particular tweaking on your YunoHost instance ? : no

Description of my issue

I have a pretty easy question regarding #Nextcloud, I setup a Yunohost server, which is currently only running Nextcloud, I wanted to ease the administration and setup work a bit and know how well #Yunohost works.

The question is about the skeleton folder for Nextcloud, the path to the skeleton folder is /var/www/nextcloud/core/skeleton, it contains the dummy data every user gets in their Nextcloud folder during the account setup.

I want to change this data, I think users can get a bit confused by this many files and folders that are there and might just think they have to keep them, so instead I want to give them just a “read me” file.

There is plenty of info about the skeleton data here, but in the bottom it reads:

Overwriting the files in core/skeleton is not recommended, because those changes will be overwritten on the next update of the Nextcloud server.

So finally my question

In Yunohost, would it be advisable to just configure some different skeleton folder via the Nextcloud config or will this be a problem too?
The choices I have are to either set a different skeleton folder or to restore the skeleton folder after every update of Nextcloud.

I am not sure what would be the best choice. Maybe someone can shed some light on it or share their experience with this.